Mouse hypothalamic astrocytes — chow vs HFD (TRAP-seq)
Mus musculus · Whole hypothalamus · TRAP-seq (translatome)
Selected data and study scope
This dataset contains TRAP-seq (translatome) data from Mus musculus, sampled from whole hypothalamus. The default comparison examines gene expression in Sham-HFD relative to Sham-Chow.
The explorer includes 1 track and 1 comparison for this dataset.
The default track, Hypothalamic astrocytes (TRAP), includes 7 Sham-Chow samples and 6 Sham-HFD samples in this comparison. These are analysis sample counts. Check the source for biological replication and pooling.
Interpretation and limitations
This preparation profiles ribosome-associated RNA from the targeted cells. Treat the result as a translatome measurement. It does not represent total RNA from every cell in the anatomical region.
Expression values are CPM (TMM-normalized): counts per million on library sizes adjusted by the TMM factors of the study’s own edgeR fit. This scale adjusts for library size and composition, not gene length. Use it to inspect a feature across the samples in this analysis. CPM values are not absolute transcript counts.
Evidence and verification
Pipeline QC passed. Mouse hypothalamic astrocytes — chow vs HFD (TRAP-seq); all 1 registered contrasts on default track astrocytes
Experimental design passed. Mouse hypothalamic astrocytes — chow vs HFD (TRAP-seq); all 1 registered contrasts on default track astrocytes
Author concordance not assessed. Author effect concordance has not been assessed
Pipeline QC can pass while experimental-design limitations remain. Read both assessments before interpreting results.
Open the dataset in the Explorer to read each check and its evidence. Author concordance compares effects for matched genes. It does not require identical author P values or FDR.
Read the analysis methods and interpretation guide and how to cite the source study and HypoExplorer. The source publication may include tissues, groups or comparisons beyond the data shown here.
Source study
Hypothalamic astrocyte TRAP-seq translatome, Sham chow vs HFD — tests the glial source of the IGFBP-transport shift (GSE214683)
Source publication
Dorfman MD, Monfeuga T, Melhorn SJ, Kanter JE, Frey JM, Fasnacht RD, et al.
American journal of physiology. Endocrinology and metabolism · 2023
Repository study title
Hypothalamic astrocytes TRAP-seq in ORX/HFD mice
The original study authors produced these data. HypoExplorer displays selected data and analyses that may cover only part of the study.
Comparisons in HypoExplorer
Sham-HFD vs Sham-Chow · default
Positive differential-expression values indicate higher expression in the case group relative to the baseline. Check the comparison direction and study design when interpreting results.
Available tracks
| Track | Features | Sham-Chow n | Sham-HFD n |
|---|---|---|---|
| Hypothalamic astrocytes (TRAP) | 13,612 | 7 | 6 |
Expression and analysis results
Open this dataset to inspect gene expression and differential-expression results across the available tracks. Pathway enrichment is also available. The pathway databases differ by dataset.
HypoExplorer is in beta testing. Features and analyses may change during testing. Review the original source, analysis methods and quality-control checks before using a result in research.